G Peralta, C Webber, GLW Perry, DB Stouffer, DP Vázquez, JM Tylianakis. Scale-dependent effects of landscape structure on pollinator traits, species interactions and pollination success. Ecography (accepted).

MD Bimler, MM Mayfield, TE Martyn, DB Stouffer. Estimating interaction strengths for diverse horizontal systems using performance data. Methods in Ecology & Evolution (accepted).
[preprint]

DB Stouffer. A critical examination of models of annual-plant population dynamics and density-dependent fecundity. Methods in Ecology & Evolution 13(11), 2516–2530 (2022).
[journal]

LP Martins, DB Stouffer, PG Blendinger, K Böhning-Gaese, G Buitrón-Jurado, M Correia, JM Costa, DM Dehling, CI Donatti, C Emer, M Galetti, R Heleno, P Jordano, Í Menezes, JC Morante-Filho, MC Muñoz, EL Neuschulz, MA Pizo, M Quitián, RA Ruggera, F Saavedra, V Santillán, M Schleuning, LP da Silva, FR da Silva, S Timóteo, A Traveset, MGR Vollstädt, JM Tylianakis. Global and regional ecological boundaries explain abrupt changes in avian frugivory interactions. Nature Communications 13, 6943 (2022).
[journal] [preprint]

R Runghen, DB Stouffer, GV Dalla Riva. Exploiting node metadata to predict interactions in bipartite networks using graph embedding and neural networks. Royal Society Open Science 9(8), 220079 (2022).
[journal] [preprint]

L Chalmandrier, DB Stouffer, AST Purcell, WG Lee, AJ Tanentzap, DC Laughlin. Predictions of biodiversity are improved by integrating trait-based competition with abiotic filtering. Ecology Letters 25(5), 1277–1289 (2022).
[journal] [preprint]

DM Dehling, GV Dalla Riva, MC Hutchinson, DB Stouffer. Niche packing and local coexistence in a megadiverse guild of frugivorous birds are mediated by fruit dependence and shifts in interaction frequencies. The American Naturalist 199(6), 855–868 (2022).
[journal]

HR Lai, KY Chong, ATK Yee, MM Mayfield, DB Stouffer. Non-additive biotic interactions improve predictions of tropical tree growth and impact community size structure. Ecology 103(2), e03588 (2022).
[journal] [pdf] [preprint]

J Llewelyn, G Strona, MC McDowell, CN Johnson, KJ Peters, DB Stouffer, SN de Visser, F Saltré, CJA Bradshaw. Sahul's megafauna were vulnerable to plant-community changes due to their position in the trophic network. Ecography 2022(1), e06089 (2022).
[journal] [pdf] [preprint]

M Novak, DB Stouffer. Geometric complexity and the information-theoretic comparison of functional-response models. Frontiers in Ecology and Evolution 9, 740362 (2021).
[journal] [pdf] [preprint]

P Capdevila, I Stott, I Oliveras Menor, DB Stouffer, RLG Raimundo, H White, M Barbour, R Salguero-Gómez. Reconciling resilience across ecological systems, species and subdisciplines. Journal of Ecology 109(9), 3102–3113 (2021).
[journal] [pdf]

DM Dehling, IMA Bender, PG Blendinger, K Böhning-Gaese, MC Muñoz, EL Neuschulz, M Quitián, F Saavedra, V Santillán, M Schleuning, DB Stouffer. Specialists and generalists fulfil important and complementary functional roles in ecological processes. Functional Ecology 38(8), 1810–1821 (2021).
[journal] [pdf]

A Cervantes-Loreto, CA Ayers, EK Dobbs, BJ Brosi, DB Stouffer. The context dependency of pollinator interference: how environmental conditions and co-foraging species impact floral visitation. Ecology Letters 24(7), 1443–1454 (2021).
[journal] [pdf] [preprint]

L Chalmandrier, F Hartig, DC Laughlin, H Lischke, M Pichler, DB Stouffer, L Pellissier. Linking functional traits and demography to model species-rich communities. Nature Communications 12, 2724 (2021).
[journal] [pdf]

R Runghen, B Bramon Mora, A Godoy-Lorite, DB Stouffer. Assessing unintended human-mediated dispersal using visitation networks. Journal of Applied Ecology 58(4), 777–788 (2021).
[journal] [pdf]

TE Martyn, DB Stouffer, O Godoy, I Bartomeus, AI Pastore, MM Mayfield. Identifying 'useful' fitness models: balancing the benefits of added complexity with realistic data requirements in models of individual plant fitness. The American Naturalist 197(4), 415–433 (2021).
[journal] [pdf]

DB Stouffer, M Novak. Hidden layers of density dependence in consumer feeding rates. Ecology Letters 24(3), 520–532 (2021).
[journal] [pdf] [preprint]

M Novak, DB Stouffer. Systematic bias in studies of consumer functional responses. Ecology Letters 24(3), 580–593 (2021).
[journal] [pdf] [preprint]

C Coux, I Donoso, JM Tylianakis, D García, D Martínez, DM Dehling, DB Stouffer. Tricky partners: native plants show stronger interaction preferences than their exotic counterparts. Ecology 11(2), e03239 (2021).
[journal] [pdf]

B Bramon Mora, E Shin, P CarraDonna, DB Stouffer. Untangling the seasonal dynamics of plant-pollinator communities. Nature Communications 11, 4086 (2020).
[journal] [pdf]

J Xiao, Y Li, C Chu, Y Wang, SJ Meiners, DB Stouffer. Higher-order interactions mitigate direct negative effects on population dynamics of herbaceous plants during succession. Environmental Research Letters 15(7), 074023 (2020).
[journal] [pdf]

DM Dehling, G Peralta, IMA Bender, PG Blendinger, K Böhning-Gaese, MC Muñoz, EL Neuschulz, M Quitián, F Saavedra, V Santillán, M Schleuning, DB Stouffer. Similar composition of functional roles in Andean seed-dispersal networks, despite high species and interaction turnover. Ecology 101(7), e03028 (2020).
[journal] [pdf]

AR Cirtwill, GV Dalla Riva, NJ Baker, M Ohlsson, I Norström, I-M Wohlfarth, JA Thia, DB Stouffer. Related plants tend to share pollinators and herbivores, but strength of phylogenetic signal varies among plant families. New Phytologist 226(3), 909–920 (2020).
[journal] [pdf]

G Peralta, DB Stouffer, EM Bringa, DP Vázquez. No such thing as a free lunch: interaction costs and the structure and stability of mutualistic networks. Oikos 129(4), 503–511 (2020).
[journal] [pdf]

C Llopis-Belenguer, I Blasco-Costa, JA Balbuena, V Sarabeev, DB Stouffer. Native and invasive hosts play different roles in host-parasite networks. Ecography 43(4), 559–568 (2020).
[journal] [pdf]

M Delgado-Baquerizo, G Doulcier, DJ Eldridge, DB Stouffer, FT Maestre, J Wang, JR Powell, TC Jeffries, BK Singh. Increases in aridity lead to drastic shifts in the assembly of dryland complex microbial networks. Land Degradation & Development 31(3), 346–355 (2020).
[journal] [pdf]

C Albouy, P Archambault, W Appeltans, MB Araújo, D Beauchesne, K Cazelles, AR Cirtwill, M-J Fortin, N Galiana, SJ Leroux, L Pellissier, T Poisot, DB Stouffer, SA Wood, D Gravel. The marine fish food web is globally connected. Nature Ecology & Evolution 3, 1153–1161 (2019).
[journal] [pdf]

B Baiser, D Gravel, AR Cirtwill, JA Dunne, AK Fahimipour, LJ Gilarranz, JA Grochow, D Li, ND Martinez, A McGrew, T Poisot, TN Romanuk, DB Stouffer, LB Trotta, FS Valdovinos, RJ Williams, SA Wood, JD Yeakel. Ecogeographical rules and the macroecology of food webs. Global Ecology and Biogeography 28(9), 1204–1218 (2019).
[journal] [pdf]

EF Cagua, KL Wootton, DB Stouffer. Keystoneness, centrality, and the structural controllability of ecological networks. Journal of Ecology 107(4), 1779–1790 (2019).
[journal] [pdf]

D Gravel, B Baiser, JA Dunne, J-P Kopelke, ND Martinez, T Nyman, T Poisot, DB Stouffer, JM Tylianakis, SA Wood, T Roslin. Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks. Ecography 42(3), 401–415 (2019).
[journal] [pdf] [preprint]

DB Stouffer. All ecological models are wrong, but some are useful. Journal of Animal Ecology 88(2), 192–195 (2019).
[journal] [pdf]

B Bramon Mora, GV Dalla Riva, DB Stouffer. Unmasking common structural patterns in incidence matrices: an application to ecological data. Journal of the Royal Society Interface 16(151), 20180747 (2019).
[journal] [pdf]

AD Letten, DB Stouffer. The mechanistic basis for higher-order interactions and non-additivity in competitive communities. Ecology Letters 22(3), 423–436 (2019).
[journal] [pdf]

MC Hutchinson, B Bramon Mora, S Pilosof, AK Barner, S Kéfi, E Thébault, P Jordano, DB Stouffer. Seeing the forest for the trees: putting multilayer networks to work for community ecology. Functional Ecology 33(2), 206–217 (2019).
[journal] [pdf]

BI Simmons, AR Cirtwill, NJ Baker, HS Wauchope, LV Dicks, DB Stouffer, WJ Sutherland. Motifs in bipartite ecological networks: uncovering indirect interactions. Oikos 128(2), 154–170 (2019).
[journal] [pdf] [preprint]

C Aldebert, DB Stouffer. Community dynamics and sensitivity to model structure: toward a probabilistic view of process-based model predictions. Journal of the Royal Society Interface 15(149), 20180741 (2018).
[journal] [pdf]

DM Dehling, DB Stouffer. Bringing the Eltonian niche into functional diversity. Oikos 127(12), 1711–1723 (2018).
[journal] [pdf]

B Bramon Mora, D Gravel, LJ Gilarranz, T Poisot, DB Stouffer. Identifying a common backbone of interactions underlying food webs from different ecosystems. Nature Communications 9, 2603 (2018).
[journal] [pdf]

MD Bimler, DB Stouffer, HR Lai, MM Mayfield. Accurate predictions of coexistence in natural systems require the inclusion of facilitative interactions and environmental dependency. Journal of Ecology 106(5), 1839–1852 (2018).
[journal] [pdf] [erratum]

MC Hutchinson, MP Gaiarsa, DB Stouffer. Contemporary ecological interactions improve models of past trait evolution. Systematic Biology 67(5), 861–872 (2018).
[journal] [pdf]

AR Cirtwill, T Roslin, C Rasmussen, JM Olesen, DB Stouffer. Between-year changes in community composition shape species' roles in an Arctic plant-pollinator network. Oikos 127(8), 1163–1176 (2018).
[journal] [pdf]

DB Stouffer, CE Wainwright, T Flanagan, MM Mayfield. Cyclic population dynamics and density-dependent intransitivity as pathways to coexistence between co-occurring annual plants. Journal of Ecology 106(3), 838–851 (2018).
[journal] [pdf]

T Poisot, DB Stouffer. Interactions retain the co-phylogenetic matching that communities lost. Oikos 127(2), 230–238 (2018).
[journal] [pdf] [preprint]

TD Northfield, SGW Laurance, MM Mayfield, DR Paini, WE Snyder, DB Stouffer, JT Wright, L Lach. Native turncoats and indirect facilitation of species invasions. Proceedings of the Royal Society of London B 285(1871), 20171936 (2018).
[journal] [pdf]

I Donoso, D García, D Martínez, JM Tylianakis, DB Stouffer. Complementary effects of species abundances and ecological neighborhood on the occurrence of fruit-frugivore interaction. Frontiers in Ecology and Evolution 5, 133 (2017).
[journal] [pdf]

A Lustig, DB Stouffer, C Doscher, SP Worner. Landscape metrics as a framework to measure the effect of landscape structure on the spread of invasive insect species. Landscape Ecology 32(12), 2311–2325 (2017).
[journal] [pdf]

MC Hutchinson, EF Cagua, DB Stouffer. Cophylogenetic signal is detectable in pollination interactions across ecological scales. Ecology 98(10), 2640–2652 (2017).
[journal] [pdf]

AR Cirtwill, C Lagrue, R Poulin, DB Stouffer. Host taxonomy constrains the properties of trophic transmission routes for parasites in lake food webs. Ecology 98(9), 2401–2412 (2017).
[journal] [pdf]

A Lustig, SP Worner, JPW Pitt, C Doscher, DB Stouffer, SD Senay. A modelling framework for the establishment and spread of invasive species in heterogeneous environments. Ecology and Evolution 7(20), 8338–8348 (2017).
[journal] [pdf]

MC Hutchinson, EF Cagua, JA Balbuena, DB Stouffer, T Poisot. paco: implementing Procrustean Approach to Cophylogeny in R. Methods in Ecology & Evolution 8(8), 932–940 (2017).
[journal] [pdf]

E Delmas, U Brose, D Gravel, DB Stouffer, T Poisot. Simulations of biomass dynamics in community food webs. Methods in Ecology & Evolution 8(7), 881–886 (2017).
[journal] [pdf] [preprint]

MM Mayfield, DB Stouffer. Higher-order interactions capture unexplained complexity in diverse communities. Nature Ecology & Evolution 1, 0062 (2017).
[journal] [pdf]

O Godoy, DB Stouffer, NJB Kraft, JM Levine. Intransitivity is infrequent and fails to promote annual plant coexistence without pairwise niche differences. Ecology 98(5), 1193–1200 (2017).
[journal] [pdf]

T Poisot, DB Stouffer, S Kéfi. Describe, understand and predict: why do we need networks in ecology? Functional Ecology 30(12), 1878–1882 (2016).
[journal] [pdf]

KL Wootton, DB Stouffer. Species' traits and food-web complexity interactively affect a food web's response to press disturbance. Ecosphere 7(11), e01518 (2016).
[journal] [pdf]

AR Cirtwill, DB Stouffer. Knowledge of predator-prey interactions improves predictions of immigration and extinction in island biogeography. Global Ecology and Biogeography 25(7), 900–911 (2016).
[journal] [pdf]

KL Wootton, DB Stouffer. Many weak interactions and few strong; food-web feasibility depends on the combination of the strength of species' interactions and their correct arrangement. Theoretical Ecology 9(2), 185–195 (2016).
[journal] [pdf]

T Poisot, D Gravel, S Leroux, SA Wood, M-J Fortin, B Baiser, AR Cirtwill, MB Araújo, DB Stouffer. Synthetic datasets and community tools for the rapid testing of ecological hypotheses. Ecography 39(4), 402–408 (2016).
[journal] [pdf] [preprint]

T Poisot, AR Cirtwill, K Cazelles, D Gravel, M-J Fortin, DB Stouffer. The structure of probabilistic networks. Methods in Ecology & Evolution 7(3), 303–312 (2016).
[journal] [pdf] [preprint]

GV Dalla Riva, DB Stouffer. Exploring the evolutionary signature of food webs' backbones using functional traits. Oikos 125(5), 446–456 (2016).
[journal] [pdf]

A Eklöf, DB Stouffer. The phylogenetic component of food-web structure and intervality. Theoretical Ecology 9(1), 107–115 (2016).
[journal] [pdf]

T Poisot, B Baiser, JA Dunne, S Kéfi, F Massol, N Mouquet, TN Romanuk, DB Stouffer, SA Wood, D Gravel. mangal - making complex ecological network analysis simple. Ecography 39(4), 384–390 (2016).
[journal] [pdf] [preprint]

JA Thia, ML Hale, DB Stouffer, HM Chapman. Limited dispersal into appropriate microhabitats likely explains recruitment failure in a chimpanzee-dependent tree species. African Journal of Ecology 54(1), 121–124 (2016).
[journal] [pdf]

AR Cirtwill, DB Stouffer, R Poulin, C Lagrue. Are parasite richness and abundance linked to prey species richness and individual feeding preferences in fish hosts? Parasitology 143(1), 75–86 (2016).
[journal] [pdf]

AR Cirtwill, DB Stouffer, TN Romanuk. Latitudinal gradients in biotic niche breadth vary across ecosystem types. Proceedings of the Royal Society of London B 282(1819), 20151589 (2015).
[journal] [pdf] [erratum]

A Lustig, DB Stouffer, M Roigé, SP Worner. Towards more predictable and consistent landscape metrics across spatial scales. Ecological Indicators 57, 11–21 (2015).
[journal] [pdf]

AR Cirtwill, DB Stouffer. Concomitant predation on parasites is highly variable but constrains the ways in which parasites contribute to food-web structure. Journal of Animal Ecology 84(3), 734–744 (2015).
[journal] [pdf]

T Poisot, DB Stouffer, D Gravel. Beyond species: why ecological interaction networks vary through space and time. Oikos 124(3), 243–251 (2015).
[journal] [pdf] [preprint]

NJ Baker, R Kaartinen, T Roslin, DB Stouffer. Species' roles in food webs show fidelity across a highly variable oak forest. Ecography 38(2), 130–139 (2015).
[journal] [pdf]

DB Stouffer, AR Cirtwill, J Bascompte. How exotic plants integrate into pollination networks. Journal of Ecology 102(6), 1442–1450 (2014).
[journal] [pdf]

JE Lavabre, DB Stouffer, R Sanz, J Bascompte. Seed dispersal in heterogeneous landscapes: linking field observations with spatially explicit models. Oikos 123(11), 1355–1364 (2014).
[journal] [pdf]

D García, D Martínez, DB Stouffer, JM Tylianakis. Exotic birds increase generalization and compensate for native bird decline in plant-frugivore assemblages. Journal of Animal Ecology 83(6), 1441–1450 (2014).
[journal] [pdf]

S Saavedra, DB Stouffer. "Disentangling nestedness" disentangled. Nature 500(7463), E1–E3 (2013).
[journal] [pdf]

H Tomimatsu, T Sasaki, H Kurokawa, JR Bridle, C Fontaine, DB Stouffer, M Vellend, M Bezemer, T Fukami, E Hadly, MGA van der Heijden, M Kawata, S Kéfi, NJB Kraft, KS McCann, PJ Mumby, T Nakashizuka, OL Petchey, TN Romanuk, KN Suding, G Takimoto, J Urabe, S Yachi. Sustaining ecosystem functions in a changing world: a call for an integrated approach. Journal of Applied Ecology 50(5), 1124–1130 (2013).
[journal] [pdf]

JA Dunne, KD Lafferty, AP Dobson, RF Hechinger, AM Kuris, ND Martinez, JP McLaughlin, KN Mouritsen, R Poulin, K Reise, DB Stouffer, DW Thieltges, RJ Williams, CD Zander. Parasites affect food web structure primarily through increased diversity and complexity. PLoS Biology 11(6), e1001579 (2013).
[journal] [pdf]

RM Thompson, U Brose, JA Dunne, RO Hall, S Hladyz, RL Kitching, ND Martinez, H Rantala, T Romanuk, DB Stouffer, JM Tylianakis. Food webs: Reconciling the structure and function of biodiversity. Trends in Ecology and Evolution 27(12), 689–697 (2012).
[journal] [pdf]

DB Stouffer, M Sales-Pardo, MI Sirer, J Bascompte. Evolutionary conservation of species' roles in food webs. Science 335(6075), 1489–1492 (2012).
[journal] [pdf]

AM Poole, DB Stouffer, JM Tylianakis. 'Ecosystomics': ecology by sequencer. Trends in Ecology and Evolution 27(6), 309–310 (2012).
[journal] [pdf]

S Saavedra, DB Stouffer, B Uzzi, J Bascompte. Strong contributors to network persistence are the most vulnerable to extinction. Nature 478(7368), 233–235 (2011).
[journal] [pdf]

DB Stouffer, EL Rezende, LAN Amaral. The role of body mass in diet contiguity and food-web structure. Journal of Animal Ecology 80(3), 632–639 (2011).
[journal] [pdf]

DB Stouffer, J Bascompte. Compartmentalization increases food-web persistence. Proceedings of the National Academy of Sciences USA 108(9), 3648–3652 (2011).
[journal] [pdf]

R Guimerà, DB Stouffer, M Sales-Pardo, EA Leicht, MEJ Newman, LAN Amaral. Origin of compartmentalization in food webs. Ecology 91(10), 2941–2951 (2010).
[journal] [pdf]

MA Fortuna, DB Stouffer, JM Olesen, P Jordano, D Mouillot, BR Krasnov, R Poulin, J Bascompte. Nestedness versus modularity in ecological networks: two sides of the same coin? Journal of Animal Ecology 79(4), 811–817 (2010).
[journal] [pdf]

DB Stouffer, J Bascompte. Understanding food-web persistence from local to global scales. Ecology Letters 13(2), 154–161 (2010).
[journal] [pdf]

DB Stouffer. Scaling from individuals to networks in food webs. Functional Ecology 24(1), 44–51 (2010).
[journal] [pdf]

RD Malmgren, DB Stouffer, ASLO Campanharo, LAN Amaral. On universality in human correspondence activity. Science 325(5948), 1696–1700 (2009).
[journal] [pdf]

J Bascompte, DB Stouffer. The assembly and disassembly of ecological networks. Philosophical Transactions of the Royal Society of London B 364(1524), 1781–1787 (2009).
[journal] [pdf]

RD Malmgren, DB Stouffer, A Motter, LAN Amaral. A Poissonian explanation for heavy tails in e-mail communication. Proceedings of the National Academy of Sciences USA 105(47), 18153–18158 (2008).
[journal] [pdf]

DB Stouffer, CA Ng, LAN Amaral. Ecological engineering and sustainability: A new opportunity for chemical engineering. AIChE Journal 54(12), 3040–3047 (2008).
[journal] [pdf]

DB Stouffer, J Camacho, W Jiang, LAN Amaral. Evidence for the existence of a robust pattern of prey selection in food webs. Proceedings of the Royal Society of London B 274(1621), 1931–1940 (2007).
[journal] [pdf]

J Camacho, DB Stouffer, LAN Amaral. Quantitative analysis of the local structure of food webs. Journal of Theoretical Biology 246(2), 260–268 (2007).
[journal] [pdf]

DB Stouffer, J Camacho, LAN Amaral. A robust measure of food web intervality. Proceedings of the National Academy of Sciences USA 103(50), 19015–19020 (2006).
[journal] [pdf]

DB Stouffer, J Camacho, R Guimerà, CA Ng, LAN Amaral. Quantitative patterns in the structure of model and empirical food webs. Ecology 86(5), 1301–1311 (2005).
[journal] [pdf]

HR Lai, PJ Bellingham, JK McCarthy, SJ Richardson, SK Wiser, DB Stouffer. Environmental gradients modify biotic interactions among tree species in temperate rain forest. Authorea
[preprint]

E Delmas, DB Stouffer, T Poisot. Food web structure alters ecological communities top-heaviness with little effect on the biodiversity-functioning relationship. bioRxiv
[preprint]

EF Cagua, A Lustig, JM Tylianakis, DB Stouffer. Environment affects specialisation of plants and pollinators. bioRxiv
[preprint]

EF Cagua, HJ Marrero, JM Tylianakis, DB Stouffer. The trade-offs of sharing pollinators: pollination service is determined by the community context. bioRxiv
[preprint]

B Bramon Mora, AR Cirtwill, DB Stouffer. pymfinder: a tool for the motif analysis of binary and quantitative complex networks. bioRxiv
[preprint]

T Poisot, DB Stouffer. How ecological networks evolve. bioRxiv
[preprint]

DB Stouffer, MA Fortuna, J Bascompte
Ideas for moving beyond structure to dynamics of ecological networks.
in S Boccaletti, V Latora, and Y Moreno (eds.), Handbook on Biological Networks. World Scientific Publishing Company, Singapore, pp. 307–328 (2008).
[publisher]